PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g44680
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 417aa    MW: 46344.1 Da    PI: 9.7653
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g44680genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-056082123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C++C+k F r  nL+ H r H
  CA00g44680 60 FICEICNKGFQRDQNLQLHRRGH 82
                89*******************88 PP

2zf-C2H214.20.00012137159123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H +t+
  CA00g44680 137 WKCEKCSKKYAVQSDWKAHTKTC 159
                 58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.73E-75982No hitNo description
Gene3DG3DSA:3.30.160.601.1E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121714.8E-56082IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8456082IPR007087Zinc finger, C2H2
SMARTSM003550.0226082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355130102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.73E-7132157No hitNo description
SMARTSM00355130137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MMSGDLFSIH QQQVVEVPNP NNSKANSSSS KKRRNLPGTP DPDAEVIALS PKTLMATNRF  60
ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNKQEIVKKK VYICPEKACV HHDPSRALGD  120
LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHTKTCG TREYKCDCGT LFSRKDSFIT  180
HRAFCDALAE ESARITSVGT TTNTLNFNHH QQQQQQPNLP IGISQISTTF SQDFTTSNNN  240
CLHQKPRLSH WLNQSNTNLF SSNSAGLILP DHHHHMVQIP SPNMFNNTSS INAPMSSAPM  300
SATALLQKAA QIGSTKSTTT NCNFSNTFGV MNSSSSSSPS SNNVTQIFNS NTNNNVLLNG  360
CPDMHPQNIH FNLDNSLTRD FLGMGNEGGQ PFLPQELVKF ASMNSAMGLS HYTNGQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-164HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542707.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
SwissprotQ700D21e-132IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLM0ZNC90.0M0ZNC9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000043900.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.15e-98C2H2-like zinc finger protein